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CoGe BLAST Analysis
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CoGeBlast Settings
Query Sequence Name
Organism Name
Chromosome
Position
HSP Number
HSP Length
Query Sequence Coverage
HSP E-value
HSP Percent Identity
HSP Score
HSP Quality (query coverage * percent ID)
Closest Genomic Feature
Distance to Closest Feature
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Use CoGe Blast
Use NCBI Blast
Run GoGe Blast
CoGe BLAST Options:
Organism Name:
Organism Description:
Organism count: 7424
Please search
Get Genome Info
Add all listed
Remove
Add
Genomes to BLAST:
No Database Selected
Blast Parameters
E-Value:
1e-30
1e-20
1e-10
1e-6
1e-5
0.0001
0.001
0.01
0.1
1
10
100
Word size:
Gap Costs:
Existence: 5 Extension: 2
Existence: 2 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 3 Extension: 1
Existence: 2 Extension: 1
Existence: 1 Extension: 1
Existence: 5 Extension: 2
Existence: 2 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 2 Extension: 1
Existence: 1 Extension: 1
Existence: 5 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 2 Extension: 1
Existence: 1 Extension: 1
Existence: 4 Extension: 4
Existence: 2 Extension: 4
Existence: 0 Extension: 4
Existence: 3 Extension: 3
Existence: 6 Extension: 2
Existence: 5 Extension: 2
Existence: 4 Extension: 2
Existence: 2 Extension: 2
Existence: 12 Extension: 8
Existence: 6 Extension: 5
Existence: 5 Extension: 5
Existence: 4 Extension: 5
Existence: 3 Extension: 5
Existence: 5 Extension: 2
Existence: 3 Extension: 2
Existence: 2 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 4 Extension: 1
Existence: 3 Extension: 1
Existence: 2 Extension: 1
Existence: 9 Extension: 2
Existence: 8 Extension: 2
Existence: 7 Extension: 2
Existence: 12 Extension: 1
Existence: 11 Extension: 1
Existence: 10 Extension: 1
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 5 Extension: 2
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Existence: 8 Extension: 1
Existence: 8 Extension: 2
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 11 Extension: 1
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Existence: 8 Extension: 2
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 11 Extension: 1
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Existence: 13 Extension: 3
Existence: 12 Extension: 3
Existence: 11 Extension: 3
Existence: 10 Extension: 3
Existence: 15 Extension: 2
Existence: 14 Extension: 2
Existence: 13 Extension: 2
Existence: 12 Extension: 2
Existence: 19 Extension: 1
Existence: 18 Extension: 1
Existence: 17 Extension: 1
Existence: 16 Extension: 1
Filter query sequence:
Yes
No
Limit results to:
per organism
Word size:
Gap start penality:
Gap extend penality:
Chaining:
no chaining
just output chain
chain and extend
just output HSPs
Score threshold:
Mask threshold:
NCBI Blast
NCBI BLAST Options:
BLAST Parameters
Job Title
Database
Filter
Off
Low Complexity
Human Repeats
Mask for Lookup
BLAST Scoring
E-Value
1e-30
1e-20
1e-10
1e-6
1e-5
0.0001
0.001
0.01
0.1
1
10
100
Word size
16
20
24
28
32
48
64
Gap Costs:
Linear
Existence: 5 Extension: 2
Existence: 2 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 3 Extension: 1
Existence: 2 Extension: 1
Existence: 1 Extension: 1
Linear
Existence: 5 Extension: 2
Existence: 2 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 2 Extension: 1
Existence: 1 Extension: 1
Linear
Existence: 5 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 2 Extension: 1
Existence: 1 Extension: 1
Linear
Existence: 4 Extension: 4
Existence: 2 Extension: 4
Existence: 0 Extension: 4
Existence: 3 Extension: 3
Existence: 6 Extension: 2
Existence: 5 Extension: 2
Existence: 4 Extension: 2
Existence: 2 Extension: 2
Linear
Existence: 12 Extension: 8
Existence: 6 Extension: 5
Existence: 5 Extension: 5
Existence: 4 Extension: 5
Existence: 3 Extension: 5
Existence: 5 Extension: 2
Existence: 3 Extension: 2
Existence: 2 Extension: 2
Existence: 1 Extension: 2
Existence: 0 Extension: 2
Existence: 4 Extension: 1
Existence: 3 Extension: 1
Existence: 2 Extension: 1
Existence: 9 Extension: 2
Existence: 8 Extension: 2
Existence: 7 Extension: 2
Existence: 12 Extension: 1
Existence: 11 Extension: 1
Existence: 10 Extension: 1
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 5 Extension: 2
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Existence: 8 Extension: 1
Existence: 8 Extension: 2
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 11 Extension: 1
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Existence: 8 Extension: 2
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 11 Extension: 1
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Existence: 13 Extension: 3
Existence: 12 Extension: 3
Existence: 11 Extension: 3
Existence: 10 Extension: 3
Existence: 15 Extension: 2
Existence: 14 Extension: 2
Existence: 13 Extension: 2
Existence: 12 Extension: 2
Existence: 19 Extension: 1
Existence: 18 Extension: 1
Existence: 17 Extension: 1
Existence: 16 Extension: 1
Query Sequence(s):
Sequences (fasta format):
Select a BLAST to run:
Enter a fasta sequence here
Nucleotide Sequence
blastn
tblastx
blastz
Protein Sequence
tblastn
Color Blast Hits According to:
None
Query Sequence
Log Quality
Percent Identity
Nucleotide Sequence
blastn
blastx
tblastx
Protein Sequence
blastp
tblastn
Currently logged in as: public
2009-11-23 16:52:52
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